Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015797106.1_cds_XP_016453410.1_4711
CDS Infomation

[gene=LOC107777784] [db_xref=GeneID:107777784] [protein=probable polygalacturonase] [protein_id=XP_016453410.1] [location=join(5100..5135,6024..6374,6842..6962,7070..7244,7326..7396,7501..8207)] [gbkey=CDS]
Sequence

ATGCATTCATTTCATAGAATCCCATTGCCATCTCAGATGGAAAAGACAAGTTGGTTGCTA
GTAGTGATATTAGTGGTGGTGCTTTTAGGAGGAGCAGAGGGAAGAAAATCAAGAATTCTT
GATGAGTCTTCTTCTTATGAGTTAGAGTACAAAGCAATAAGTTGTAGAGCACACAGTGCA
TCTATAAAAGATTTTGGAGGAGTTGGAGATGGAAAAACACTCAACACAAAAGCATTTCAA
GAAGCAGTGAATCAGTTGAGCCAATATGCATCAGATGGTGGATCACAACTTATAGTACCT
GCTGGTCAATGGCTCACTGGTAGCTTCAATCTTACTAGTCATTTCACTCTCTTCCTTCAA
AAAGATGCTGTTCTTCTTGCTTCTCAGGAAATAAATGAATGGGCAGTTATAGACCCATTA
CCATCATATGGTCACGGGAGAGATGCAGCAGGTGGAAGGTACATCAGTCTCTTATTTGGC
ACTAACCTTACTGATGTTATCATCACAGGTGAGAATGGGACAATAGATGGGCAGGGTGCC
CTTTGGTGGCAGAAATTCCACAGCAAAAAACTAAAATACACAAGACCTTACCTGATTGAA
CTTATGCATTCTGATAATATTCAAATATCAAATCTAACCCTTGTCAACTCTCCATCTTGG
AATATCCATCCTGTTTATAGCAGCAATATCATTATCCAAGGCATCACTATTTTAGCTCCT
GTAAAATCTCCAAACACTGATGGGATCAATCCAGATTCTTGCACAAACATAAGACTTGAA
GATAATTACATTGTGTCTGGAGATGATTGTGTTGCAGTTAAAAGTGGTTGGGATGAATAT
GGTATAAAATATGGAATGCCAACAAGTCAATTGATTATCAGGCGCCTCACTTGTATTTCG
CCTTATAGTGCTGCAATAGCACTAGGAAGTGAAATGTCAGGTGGGATTCAAGATGTAAGA
GCGGAGGACATCACGGCCATCAACACGGAATCAGGGGTGAGGATCAAGACTGCTGTTGGC
CGAGGCGGTTTTGTCAAAGATGTATATGTCAAAGGGATGACACTTCACACAATGAAATGG
GTATTTTGGATGACTGGAAACTATGGATCACATGCTGACACTCATTGGGATCCTAATGCA
TTGCCTGAGATAAAAAGGATTAATTACCGCGATGTGGTGGCTGAGAACGTGTCGATGGCT
GCTCGGCTAGAGGGAATTTCCGGGGATCCGTTCACTGGAATCTGCATGTCCAATGTGACA
ATAAGTATGGCAAAGAAGGCCAAGAAGTATCCTTGGACTTGCACTGATATTGAAGGAATT
ACCAGTGGTGTGCAGCCTACACCTTGTCAGTTGTTGCCTGATCAAGGCCCAGAGAAGAGC
GAAATGTGTAATTTTCCTACAGAGAGTTTACCTATTGATAACATAGAGATGCAAAGATGT
TCCTATATATTGAATTACTAA

Peptide Sequence

PEP ID

XP_016453410.1
PEP Infomation

PREDICTED: probable polygalacturonase [Nicotiana tabacum]
Sequence

MHSFHRIPLPSQMEKTSWLLVVILVVVLLGGAEGRKSRILDESSSYELEYKAISCRAHSA
SIKDFGGVGDGKTLNTKAFQEAVNQLSQYASDGGSQLIVPAGQWLTGSFNLTSHFTLFLQ
KDAVLLASQEINEWAVIDPLPSYGHGRDAAGGRYISLLFGTNLTDVIITGENGTIDGQGA
LWWQKFHSKKLKYTRPYLIELMHSDNIQISNLTLVNSPSWNIHPVYSSNIIIQGITILAP
VKSPNTDGINPDSCTNIRLEDNYIVSGDDCVAVKSGWDEYGIKYGMPTSQLIIRRLTCIS
PYSAAIALGSEMSGGIQDVRAEDITAINTESGVRIKTAVGRGGFVKDVYVKGMTLHTMKW
VFWMTGNYGSHADTHWDPNALPEIKRINYRDVVAENVSMAARLEGISGDPFTGICMSNVT
ISMAKKAKKYPWTCTDIEGITSGVQPTPCQLLPDQGPEKSEMCNFPTESLPIDNIEMQRC
SYILNY

Transcript Sequence

Gene sequence data has not been registered.